Download experiment_data/pretraining_data.sh from pfnet/GenerRNA: direct link, hf CLI and curl.
- Browser
- Download file 448 Bytes
-
https://huggingface.co/pfnet/GenerRNA/resolve/main/experiment_data/pretraining_data.sh
- Command line
-
hf download hf://pfnet/GenerRNA/experiment_data/pretraining_data.sh
-
curl -L -o pretraining_data.sh https://huggingface.co/pfnet/GenerRNA/resolve/main/experiment_data/pretraining_data.sh
448 Bytes
| wget -O ftp://ftp.ebi.ac.uk/pub/databases/RNAcentral/current_release/sequences/rnacentral_active.fasta.gz | |
| gunzip rnacentral_active.fasta.gz | |
| # deduplication (mmseqs2 required) | |
| mmseqs createdb rnacentral_active.fasta rnacentral_db | |
| mmseqs cluster rnacentral_db rnacentral_cluster tmp --min-seq-id 0.8 -c 0.8 | |
| mmseqs createsubdb rnacentral_cluster rnacentral_db rnacentral_rep | |
| mmseqs convert2fasta rnacentral_rep rnacentral_clustered.fasta | |
| rm -rf tmp | |