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Sep 30

GALAX: Graph-Augmented Language Model for Explainable Reinforcement-Guided Subgraph Reasoning in Precision Medicine

In precision medicine, quantitative multi-omic features, topological context, and textual biological knowledge play vital roles in identifying disease-critical signaling pathways and targets. Existing pipelines capture only part of these-numerical omics ignore topological context, text-centric LLMs lack quantitative grounded reasoning, and graph-only models underuse node semantics and the generalization of LLMs-limiting mechanistic interpretability. Although Process Reward Models (PRMs) aim to guide reasoning in LLMs, they remain limited by unreliable intermediate evaluation, and vulnerability to reward hacking with computational cost. These gaps motivate integrating quantitative multi-omic signals, topological structure with node annotations, and literature-scale text via LLMs, using subgraph reasoning as the principle bridge linking numeric evidence, topological knowledge and language context. Therefore, we propose GALAX (Graph Augmented LAnguage model with eXplainability), an innovative framework that integrates pretrained Graph Neural Networks (GNNs) into Large Language Models (LLMs) via reinforcement guided by a Graph Process Reward Model (GPRM), which generates disease-relevant subgraphs in a step-wise manner initiated by an LLM and iteratively evaluated by a pretrained GNN, enabling process-level supervision without explicit intermediate reasoning annotations. As an application, we also introduced Target-QA, a benchmark combining CRISPR-identified targets, multi-omic profiles, and biomedical graph knowledge across diverse cancer cell lines, which enables GNN pretraining for supervising step-wise graph construction and supports long-context reasoning over text-numeric graphs (TNGs), providing a scalable and biologically grounded framework for explainable, reinforcement-guided subgraph reasoning toward reliable and interpretable target and pathway discovery in precision medicine.

  • 7 authors
·
Sep 25, 2025

Localizing Open-Ontology QA Semantic Parsers in a Day Using Machine Translation

We propose Semantic Parser Localizer (SPL), a toolkit that leverages Neural Machine Translation (NMT) systems to localize a semantic parser for a new language. Our methodology is to (1) generate training data automatically in the target language by augmenting machine-translated datasets with local entities scraped from public websites, (2) add a few-shot boost of human-translated sentences and train a novel XLMR-LSTM semantic parser, and (3) test the model on natural utterances curated using human translators. We assess the effectiveness of our approach by extending the current capabilities of Schema2QA, a system for English Question Answering (QA) on the open web, to 10 new languages for the restaurants and hotels domains. Our models achieve an overall test accuracy ranging between 61% and 69% for the hotels domain and between 64% and 78% for restaurants domain, which compares favorably to 69% and 80% obtained for English parser trained on gold English data and a few examples from validation set. We show our approach outperforms the previous state-of-the-art methodology by more than 30% for hotels and 40% for restaurants with localized ontologies for the subset of languages tested. Our methodology enables any software developer to add a new language capability to a QA system for a new domain, leveraging machine translation, in less than 24 hours.

QAdapt: A Noise-Adaptive Neural Pre-Decoding Framework for Quantum Error Correction

Fault-tolerant quantum computing (FTQC) relies on quantum error correction to suppress physical errors and preserve logical information at scale. In practice, however, performance is constrained not only by physical noise but also by the latency of classical decoders processing rapidly generated syndrome data. This challenge is exacerbated by hardware noise that is strong, heterogeneous, and nonstationary, as well as by the simulation-to-hardware distribution shift that can substantially degrade fixed neural decoders. We present QAdapt, a noise-adaptive neural pre-decoding framework for surface-code quantum error correction. QAdapt captures local spatiotemporal correlations in syndrome data, sequentially adapts to evolving noise conditions while mitigating catastrophic forgetting, and forwards the residual syndrome to a conventional global decoder. Across 110 synthetic out-of-distribution noise configurations for rotated surface-code memory circuits, QAdapt consistently reduces the logical error rate relative to the neural pre-decoding baseline. On Google's Willow benchmark data, without target-domain fine-tuning, it achieves reductions of up to 5.79 percent in logical error rate and 9.32 percent in backend decoding latency on the residual syndrome. These results demonstrate that QAdapt provides a practical and decoder-compatible approach to improving the robustness and backend decoding efficiency of quantum error correction under evolving hardware noise.

  • 4 authors
·
Jul 29

Who Judges the Judges? A Chinese Safety QA Benchmark for Evaluating LLM Responses and Safety Judges

Safety benchmarks for large language models often assess the risk of a user query, although the outcome of question answering depends on whether the response violates a policy. This distinction is critical in Chinese harmful-content evaluation, where linguistic variation and adversarial transformations can obscure risky intent. We introduce C-SafeQA, a policy-grounded benchmark for response-level Chinese safety evaluation. It comprises 538 base queries and 8,877 adversarial queries answered by four full-model LLM deployments, yielding 37,660 query-response records labeled safe, unsafe, or disputed. Reference labels are generated through agreement-aware multi-model adjudication and blind audits of stratified subsets by three safety experts. C-SafeQA supports both evaluation of target-model safety and auditing of seven automated safety judges against shared reference labels. Unsafe-response rates range from 0.93% to 3.35% on base queries and from 11.68% to 30.05% on adversarial queries. On the adversarial subset, judges show substantial trade-offs between unsafe-response recall and risk-query-conditioned safe-response false positive rate, and no judge dominates all metrics. Both acrostic transformations reduce unsafe recall for all seven judges, revealing mechanism-specific evaluator weaknesses. Dataset records, metadata, verification code, and judge scripts are publicly released to support recomputation, while benchmark construction, target-response generation, and private adjudication remain outside the release boundary.

  • 10 authors
·
Aug 31

Cross-lingual Transfer for Automatic Question Generation by Learning Interrogative Structures in Target Languages

Automatic question generation (QG) serves a wide range of purposes, such as augmenting question-answering (QA) corpora, enhancing chatbot systems, and developing educational materials. Despite its importance, most existing datasets predominantly focus on English, resulting in a considerable gap in data availability for other languages. Cross-lingual transfer for QG (XLT-QG) addresses this limitation by allowing models trained on high-resource language datasets to generate questions in low-resource languages. In this paper, we propose a simple and efficient XLT-QG method that operates without the need for monolingual, parallel, or labeled data in the target language, utilizing a small language model. Our model, trained solely on English QA datasets, learns interrogative structures from a limited set of question exemplars, which are then applied to generate questions in the target language. Experimental results show that our method outperforms several XLT-QG baselines and achieves performance comparable to GPT-3.5-turbo across different languages. Additionally, the synthetic data generated by our model proves beneficial for training multilingual QA models. With significantly fewer parameters than large language models and without requiring additional training for target languages, our approach offers an effective solution for QG and QA tasks across various languages.

  • 3 authors
·
Oct 4, 2024

QuIM-RAG: Advancing Retrieval-Augmented Generation with Inverted Question Matching for Enhanced QA Performance

This work presents a novel architecture for building Retrieval-Augmented Generation (RAG) systems to improve Question Answering (QA) tasks from a target corpus. Large Language Models (LLMs) have revolutionized the analyzing and generation of human-like text. These models rely on pre-trained data and lack real-time updates unless integrated with live data tools. RAG enhances LLMs by integrating online resources and databases to generate contextually appropriate responses. However, traditional RAG still encounters challenges like information dilution and hallucinations when handling vast amounts of data. Our approach addresses these challenges by converting corpora into a domain-specific dataset and RAG architecture is constructed to generate responses from the target document. We introduce QuIM-RAG (Question-to-question Inverted Index Matching), a novel approach for the retrieval mechanism in our system. This strategy generates potential questions from document chunks and matches these with user queries to identify the most relevant text chunks for generating accurate answers. We have implemented our RAG system on top of the open-source Meta-LLaMA3-8B-instruct model by Meta Inc. that is available on Hugging Face. We constructed a custom corpus of 500+ pages from a high-traffic website accessed thousands of times daily for answering complex questions, along with manually prepared ground truth QA for evaluation. We compared our approach with traditional RAG models using BERT-Score and RAGAS, state-of-the-art metrics for evaluating LLM applications. Our evaluation demonstrates that our approach outperforms traditional RAG architectures on both metrics.

  • 3 authors
·
Jan 5, 2025

The X-ray Integral Field Unit at the end of the Athena reformulation phase

The Athena mission entered a redefinition phase in July 2022, driven by the imperative to reduce the mission cost at completion for the European Space Agency below an acceptable target, while maintaining the flagship nature of its science return. This notably called for a complete redesign of the X-ray Integral Field Unit (X-IFU) cryogenic architecture towards a simpler active cooling chain. Passive cooling via successive radiative panels at spacecraft level is now used to provide a 50 K thermal environment to an X-IFU owned cryostat. 4.5 K cooling is achieved via a single remote active cryocooler unit, while a multi-stage Adiabatic Demagnetization Refrigerator ensures heat lift down to the 50 mK required by the detectors. Amidst these changes, the core concept of the readout chain remains robust, employing Transition Edge Sensor microcalorimeters and a SQUID-based Time-Division Multiplexing scheme. Noteworthy is the introduction of a slower pixel. This enables an increase in the multiplexing factor (from 34 to 48) without compromising the instrument energy resolution, hence keeping significant system margins to the new 4 eV resolution requirement. This allows reducing the number of channels by more than a factor two, and thus the resource demands on the system, while keeping a 4' field of view (compared to 5' before). In this article, we will give an overview of this new architecture, before detailing its anticipated performances. Finally, we will present the new X-IFU schedule, with its short term focus on demonstration activities towards a mission adoption in early 2027.

  • 282 authors
·
Feb 15, 2025

ReferTrack: Referring Then Tracking for Embodied Visual Tracking

Embodied visual tracking (EVT) requires a mobile agent to continuously follow a specific target described in natural language using only onboard vision. While recent vision-language-action (VLA) policies unify target identification and trajectory planning, their chain-of-thought (CoT) reasoning often operates in abstract spatial latents that are difficult to supervise and weakly aligned with explicit image-space detections. To address this, we introduce ReferTrack, a referring-then-tracking paradigm that grounds EVT using a single forward-facing camera. Our model first selects the target from an indexed set of bounding boxes, then decodes tracking waypoints conditioned on this image-grounded decision. To preserve target motion cues over time, ReferTrack maintains a sliding-window queue of previously selected bounding boxes, injecting their geometric features into the visual history via temporal-viewpoint-bbox indicator (TVBI) tokens. We further enhance target identification by co-training on a custom Refer-QA dataset. On EVT-Bench, ReferTrack achieves state-of-the-art single-view performance with success rates of 89.4%, 73.3%, and 74.1% on the single-target, distracted, and ambiguity tracking splits, respectively -- matching or even surpassing several multi-camera baselines on identification-heavy tasks. Finally, real-world deployments on legged and humanoid robots validate its robust sim-to-real transfer capabilities. Code is available at https://github.com/MedlarTea/referTrack.

tencent Tencent
·
Jul 21 11

TRACE: Temporal Audit and Condition-aware Evaluation of Streaming Video Understanding

Streaming video understanding requires models to interpret evidence as it arrives, yet current evaluations often report task scores without specifying when evidence becomes valid, how visual history is maintained, or how responses are triggered. As a result, similar scores may correspond to different workloads, failure modes, and operational behavior. We introduce TRACE (Temporal Audit and Condition-aware Evaluation), a condition-aware benchmark and evaluation framework that makes these factors explicit. TRACE combines temporally audited visual tasks with evidence timing and instruction-dependent trigger annotations, a unified causal Core--Adapter protocol that controls information availability while recording actual history processing and response events, and multidimensional reporting of answer quality, timeliness, response-selection behavior, workload, completion, and reliability. On 1,240 records from 517 videos, we evaluate eight publicly available models or systems in eight configurations. We find that nearly identical QA accuracy can mask substantial differences in completion, answer validity, and generation workload, while proactive performance separates into response quality, response delay, false alarms (responses emitted while no target window is currently valid and a later one remains), and missed target windows. These results show that streaming-video performance should be interpreted as execution-conditioned system behavior rather than a single score. Our benchmark and code can be accessed at https://github.com/om-ai-lab/trace-bench{https://github.com/om-ai-lab/trace-bench}.

omlab OmAI Lab
·
Sep 24 2

RoboAfford++: A Generative AI-Enhanced Dataset for Multimodal Affordance Learning in Robotic Manipulation and Navigation

Robotic manipulation and navigation are fundamental capabilities of embodied intelligence, enabling effective robot interactions with the physical world. Achieving these capabilities requires a cohesive understanding of the environment, including object recognition to localize target objects, object affordances to identify potential interaction areas and spatial affordances to discern optimal areas for both object placement and robot movement. While Vision-Language Models (VLMs) excel at high-level task planning and scene understanding, they often struggle to infer actionable positions for physical interaction, such as functional grasping points and permissible placement regions. This limitation stems from the lack of fine-grained annotations for object and spatial affordances in their training datasets. To tackle this challenge, we introduce RoboAfford++, a generative AI-enhanced dataset for multimodal affordance learning for both robotic manipulation and navigation. Our dataset comprises 869,987 images paired with 2.0 million question answering (QA) annotations, covering three critical tasks: object affordance recognition to identify target objects based on attributes and spatial relationships, object affordance prediction to pinpoint functional parts for manipulation, and spatial affordance localization to identify free space for object placement and robot navigation. Complementing this dataset, we propose RoboAfford-Eval, a comprehensive benchmark for assessing affordance-aware prediction in real-world scenarios, featuring 338 meticulously annotated samples across the same three tasks. Extensive experimental results reveal the deficiencies of existing VLMs in affordance learning, while fine-tuning on the RoboAfford++ dataset significantly enhances their ability to reason about object and spatial affordances, validating the dataset's effectiveness.

  • 9 authors
·
Nov 15, 2025

PinpointQA: A Dataset and Benchmark for Small Object-Centric Spatial Understanding in Indoor Videos

Small object-centric spatial understanding in indoor videos remains a significant challenge for multimodal large language models (MLLMs), despite its practical value for object search and assistive applications. Although existing benchmarks have advanced video spatial intelligence, embodied reasoning, and diagnostic perception, no existing benchmark directly evaluates whether a model can localize a target object in video and express its position with sufficient precision for downstream use. In this work, we introduce PinpointQA, the first dataset and benchmark for small object-centric spatial understanding in indoor videos. Built from ScanNet++ and ScanNet200, PinpointQA comprises 1,024 scenes and 10,094 QA pairs organized into four progressively challenging tasks: Target Presence Verification (TPV), Nearest Reference Identification (NRI), Fine-Grained Spatial Description (FSD), and Structured Spatial Prediction (SSP). The dataset is built from intermediate spatial representations, with QA pairs generated automatically and further refined through quality control. Experiments on representative MLLMs reveal a consistent capability gap along the progressive chain, with SSP remaining particularly difficult. Supervised fine-tuning on PinpointQA yields substantial gains, especially on the harder tasks, demonstrating that PinpointQA serves as both a diagnostic benchmark and an effective training dataset. The dataset and project page are available at https://rainchowz.github.io/PinpointQA.

  • 7 authors
·
Apr 9

Drift-Constrained Optimization: Only Direction Matters in Fine-Tuning Instruct Models

Fine-tuning instruct models often improves target performance while inducing behavioral drift from the reference model, which can degrade existing capabilities. Rather than treating this drift as an uncontrolled consequence of optimization, we specify a behavioral drift budget before optimization and ask how to boost the target-task performance within it. Locally, behavioral drift induces a shared geometry anchored at the reference model, with the drift budget defining a boundary within this space. In this space, drift determines distance from the reference, leaving update direction as the remaining degree of freedom. Fine-tuning updates can therefore be compared through their directional efficiency, naturally reformulating fine-tuning as a direction-selection problem. This reformulation makes a concrete prediction: changing the accessible directions can qualitatively alter the outcome of fine-tuning. We test this prediction in a stringent QA-only setting, where strong instruct models are fine-tuned only on final answers but must still generate multi-step reasoning at inference. Despite this mismatch, a coarse layer-selective probe reverses the failure of QA-only fine-tuning and reveals the existence of effective directions, with multiple neighboring configurations improving target performance while preserving reasoning and general capabilities. Across Qwen3-8B and Qwen3-14B, these directions substantially improve scientific reasoning and multilingual translation. Over more than 100 languages, the resulting models match or outperform dedicated translation systems and provide a stronger initialization for subsequent reinforcement learning. Our results suggest that fine-tuning is not just about how much a model changes, but how that change is spent. https://github.com/CONE-MT/DCO and https://huggingface.co/collections/LLaMAX/dco

  • 6 authors
·
Sep 11 2

HiTab: A Hierarchical Table Dataset for Question Answering and Natural Language Generation

Tables are often created with hierarchies, but existing works on table reasoning mainly focus on flat tables and neglect hierarchical tables. Hierarchical tables challenge existing methods by hierarchical indexing, as well as implicit relationships of calculation and semantics. This work presents HiTab, a free and open dataset to study question answering (QA) and natural language generation (NLG) over hierarchical tables. HiTab is a cross-domain dataset constructed from a wealth of statistical reports (analyses) and Wikipedia pages, and has unique characteristics: (1) nearly all tables are hierarchical, and (2) both target sentences for NLG and questions for QA are revised from original, meaningful, and diverse descriptive sentences authored by analysts and professions of reports. (3) to reveal complex numerical reasoning in statistical analyses, we provide fine-grained annotations of entity and quantity alignment. HiTab provides 10,686 QA pairs and descriptive sentences with well-annotated quantity and entity alignment on 3,597 tables with broad coverage of table hierarchies and numerical reasoning types. Targeting hierarchical structure, we devise a novel hierarchy-aware logical form for symbolic reasoning over tables, which shows high effectiveness. Targeting complex numerical reasoning, we propose partially supervised training given annotations of entity and quantity alignment, which helps models to largely reduce spurious predictions in the QA task. In the NLG task, we find that entity and quantity alignment also helps NLG models to generate better results in a conditional generation setting. Experiment results of state-of-the-art baselines suggest that this dataset presents a strong challenge and a valuable benchmark for future research.

  • 9 authors
·
Aug 15, 2021

Large Language Models are Temporal and Causal Reasoners for Video Question Answering

Large Language Models (LLMs) have shown remarkable performances on a wide range of natural language understanding and generation tasks. We observe that the LLMs provide effective priors in exploiting linguistic shortcuts for temporal and causal reasoning in Video Question Answering (VideoQA). However, such priors often cause suboptimal results on VideoQA by leading the model to over-rely on questions, i.e., linguistic bias, while ignoring visual content. This is also known as `ungrounded guesses' or `hallucinations'. To address this problem while leveraging LLMs' prior on VideoQA, we propose a novel framework, Flipped-VQA, encouraging the model to predict all the combinations of langleV, Q, Arangle triplet by flipping the source pair and the target label to understand their complex relationships, i.e., predict A, Q, and V given a VQ, VA, and QA pairs, respectively. In this paper, we develop LLaMA-VQA by applying Flipped-VQA to LLaMA, and it outperforms both LLMs-based and non-LLMs-based models on five challenging VideoQA benchmarks. Furthermore, our Flipped-VQA is a general framework that is applicable to various LLMs (OPT and GPT-J) and consistently improves their performances. We empirically demonstrate that Flipped-VQA not only enhances the exploitation of linguistic shortcuts but also mitigates the linguistic bias, which causes incorrect answers over-relying on the question. Code is available at https://github.com/mlvlab/Flipped-VQA.

  • 5 authors
·
Oct 24, 2023 1

When Medical Safety Alignment Fails: A Benchmark for Evaluating LLMs on High-Risk Medical Queries

Large language models (LLMs) are increasingly used for medical and health-related questions, yet their safety in high-risk medical scenarios remains poorly understood. We introduce MedHarmCode and data will be released upon acceptance. Due to the sensitive nature of high-risk medical queries, data access will be available to qualified researchers upon request., a high-risk medical safety benchmark with 1,100 medically grounded queries across 10 safety-critical categories, including toxicology, pharmacology, covert poisoning, anesthesia, and fetal harm. Unlike broad medical QA benchmarks, MedHarm targets realistic clinical, educational, and technical prompts that require refusal, caution, or safe redirection rather than direct helpfulness. We evaluate 15 LLMs spanning general-purpose, medical-purpose, closed-source, and downstream SFT models, together with 4 representative guardrail models. Results reveal a substantial gap between apparent alignment and medical safety: aligned models can still produce unsafe or actionable responses, medical fine-tuning can amplify harmful specificity, and external guardrails reduce some failures while introducing brittle blocking and weak safe helpfulness. These findings show that medical safety cannot be inferred from general alignment or medical capability alone, highlighting the need for domain-specific stress testing before deploying LLMs in safety-critical medical applications.

  • 8 authors
·
May 25

QUASAR: Lowering the Loss Floor of Quantization-Aware Training with Loss-Aware Reconstruction

As large language model inference shifts toward lower precision, post-training quantization (PTQ) becomes increasingly brittle, making quantization-aware training (QAT) essential for preserving model quality. However, QAT computes the loss and surrogate gradients using a lossy reconstruction of latent full-precision weights, while applying updates to the latent weights themselves. This mismatch can lead to suboptimal training trajectories and a higher loss floor. Second-order PTQ methods mitigate a similar gap by minimizing loss-aware reconstruction error, but doing it once for a frozen model can take hours; repeating this process throughout QAT as the weights evolve is impractical. We introduce QUASAR, a QAT method that continuously performs lightweight, loss-aware reconstruction in the training loop to lower the loss floor and improve the resulting low-bit model. At each training step, QUASAR uses the exponential moving average of squared gradients as online saliency estimates, searches over a small set of clipping ranges, and fits affine dequantizers via saliency-weighted least squares. Our analysis shows that the loss-aware reconstruction error is the only reconstruction-dependent term in the QAT convergence bound and controls the loss of the final quantized model, establishing QUASAR's objective as a principled optimization target. QUASAR modifies only the training procedure and supports standard deployment formats, including integer quantization and NVFP4, with no inference-time changes or overhead. Across Qwen3 and Llama-3.1, QUASAR achieves the lowest held-out KL divergence among competitive QAT methods at 2, 3, and 4 bits, reducing KL by at least 10% at 3 and 4 bits and by 29% at 2 bits. At 2 bits, it improves average accuracy across eight tasks by 3.5-4.3 percentage points over strong QAT and PTQ baselines.

  • 4 authors
·
Aug 14

Patch the Distribution Mismatch: RL Rewriting Agent for Stable Off-Policy SFT

Large language models (LLMs) have made rapid progress, yet adapting them to downstream scenarios still commonly relies on supervised fine-tuning (SFT). When downstream data exhibit a substantial distribution shift from the model's prior training distribution, SFT can induce catastrophic forgetting. To narrow this gap, data rewriting has been proposed as a data-centric approach that rewrites downstream training data prior to SFT. However, existing methods typically sample rewrites from a prompt-induced conditional distribution, so the resulting targets are not necessarily aligned with the model's natural QA-style generation distribution. Moreover, reliance on fixed templates can lead to diversity collapse. To address these issues, we cast data rewriting as a policy learning problem and learn a rewriting policy that better matches the backbone's QA-style generation distribution while preserving diversity. Since distributional alignment, diversity and task consistency are automatically evaluable but difficult to optimize end-to-end with differentiable objectives, we leverage reinforcement learning to optimize the rewrite distribution under reward feedback and propose an RL-based data-rewriting agent. The agent jointly optimizes QA-style distributional alignment and diversity under a hard task-consistency gate, thereby constructing a higher-quality rewritten dataset for downstream SFT. Extensive experiments show that our method achieves downstream gains comparable to standard SFT while reducing forgetting on non-downstream benchmarks by 12.34% on average. Our code is available at https://anonymous.4open.science/r/Patch-the-Prompt-Gap-4112 .

  • 6 authors
·
Feb 10