Download src/processor/validater.py from emad2001/PRISM: direct link, hf CLI and curl.
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https://huggingface.co/datasets/emad2001/PRISM/resolve/main/src/processor/validater.py
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4.7 kB
| import torch | |
| import torch.nn.functional as F | |
| # from src.utils.util import get_points | |
| import numpy as np | |
| def validater(args, val_data, logger, epoch_num, sam, | |
| loss_validation): | |
| patch_size = args.rand_crop_size[0] | |
| device = args.device | |
| with torch.no_grad(): | |
| loss_summary = [] | |
| #for idx, data in enumerate(val_data): | |
| #img, label = data['image'].to(device), data['label'].to(device) | |
| for idx, (image, label, _) in enumerate(val_data): | |
| # import torchio as tio | |
| # norm_transform = tio.ZNormalization(masking_method=lambda x: x > 0) | |
| # image = norm_transform(image.squeeze(dim=1)) # (N, C, W, H, D) | |
| # image = image.unsqueeze(dim=1) | |
| image, label = image.to(device), label.to(device) | |
| image_embedding = sam.image_encoder(image) | |
| prev_masks = interaction(args, sam, image_embedding, label, num_clicks=11) | |
| masks = prev_masks | |
| loss = loss_validation(masks, label) | |
| loss_summary.append(loss.detach().cpu().numpy()) | |
| logger.info( | |
| 'epoch: {}/{}, iter: {}/{}'.format(epoch_num, args.max_epoch, idx, len(val_data)) + ": loss:" + str( | |
| loss_summary[-1].flatten()[0])) | |
| logger.info("- Val metrics: " + str(np.mean(loss_summary))) | |
| return loss_summary | |
| def get_next_click3D_torch_2(prev_seg, gt_semantic_seg): | |
| mask_threshold = 0.5 | |
| batch_points = [] | |
| batch_labels = [] | |
| # dice_list = [] | |
| pred_masks = (prev_seg > mask_threshold) | |
| true_masks = (gt_semantic_seg > 0) | |
| fn_masks = torch.logical_and(true_masks, torch.logical_not(pred_masks)) | |
| fp_masks = torch.logical_and(torch.logical_not(true_masks), pred_masks) | |
| to_point_mask = torch.logical_or(fn_masks, fp_masks) | |
| for i in range(gt_semantic_seg.shape[0]): | |
| points = torch.argwhere(to_point_mask[i]) | |
| point = points[np.random.randint(len(points))] | |
| # import pdb; pdb.set_trace() | |
| if fn_masks[i, 0, point[1], point[2], point[3]]: | |
| is_positive = True | |
| else: | |
| is_positive = False | |
| bp = point[1:].clone().detach().reshape(1, 1, 3) | |
| bl = torch.tensor([int(is_positive), ]).reshape(1, 1) | |
| batch_points.append(bp) | |
| batch_labels.append(bl) | |
| return batch_points, batch_labels | |
| def get_points(args, prev_masks, gt3D, click_points, click_labels): | |
| batch_points, batch_labels = get_next_click3D_torch_2(prev_masks, gt3D) | |
| points_co = torch.cat(batch_points, dim=0).to(args.device) | |
| points_la = torch.cat(batch_labels, dim=0).to(args.device) | |
| click_points.append(points_co) | |
| click_labels.append(points_la) | |
| points_multi = torch.cat(click_points, dim=1).to(args.device) | |
| labels_multi = torch.cat(click_labels, dim=1).to(args.device) | |
| # if self.args.multi_click: | |
| # points_input = points_multi | |
| # labels_input = labels_multi | |
| # else: | |
| points_input = points_co | |
| labels_input = points_la | |
| return points_input, labels_input, click_points, click_labels | |
| def batch_forward(args, sam_model, image_embedding, gt3D, low_res_masks, points=None): | |
| sparse_embeddings, dense_embeddings = sam_model.prompt_encoder( | |
| points=points, | |
| boxes=None, | |
| masks=low_res_masks, | |
| ) | |
| low_res_masks, iou_predictions = sam_model.mask_decoder( | |
| image_embeddings=image_embedding.to(args.device), # (B, 256, 64, 64) | |
| image_pe=sam_model.prompt_encoder.get_dense_pe(), # (1, 256, 64, 64) | |
| sparse_prompt_embeddings=sparse_embeddings, # (B, 2, 256) | |
| dense_prompt_embeddings=dense_embeddings, # (B, 256, 64, 64) | |
| multimask_output=False, | |
| ) | |
| prev_masks = F.interpolate(low_res_masks, size=gt3D.shape[-3:], mode='trilinear', align_corners=False) | |
| return low_res_masks, prev_masks | |
| def interaction(args, sam_model, image_embedding, gt3D, num_clicks): | |
| # return_loss = 0 | |
| prev_masks = torch.zeros_like(gt3D).to(gt3D.device) | |
| random_insert = np.random.randint(2, 9) | |
| click_points, click_labels = [], [] | |
| for num_click in range(num_clicks): | |
| points_input, labels_input, click_points, click_labels = get_points(args, prev_masks, gt3D, click_points, click_labels) | |
| if num_click == random_insert or num_click == num_clicks - 1: | |
| prev_masks = batch_forward(args, sam_model, image_embedding, gt3D, prev_masks, points=None) | |
| else: | |
| prev_masks = batch_forward(args, sam_model, image_embedding, gt3D, prev_masks, points=[points_input, labels_input]) | |
| # loss = self.seg_loss(prev_masks, gt3D) | |
| # return_loss += loss | |
| #return prev_masks, return_loss | |
| return prev_masks |